AminoTrack™
     
  Overview:

This application will accept amino acid sequences in a fasta-formatted file, returning a zip archive containing sequence changes, PNG data, charge changes, and a Mutation Matrix in comma-delimited files. Due to the 255 column limit in Excel, there may be multiple files of a certain type.

NOTE: This application currently does not perform any alignment functions. Submitted sequences should be pre-aligned and in-frame.


Instructions:
  • Paste your sequence data into the large textbox.
  • Enter a short description in the description field (this is used to create the filename).
  • Enter the amino acid starting position number in the provided field. Use numeric values only.
  • Press the Generate Zipfile button.
After some processing, you should be prompted to open or save the resulting zip file. Note that this may take some time to process depending on the number of sequences submitted. After saving your file, you may press the Clear button to reset the form for another submission.

  
     
Reference:  AminoTrack™   Additional Documentation: Instructions.pdf
 
  Sequence Data:  
   
  Enter a description for this run:     
Enter starting amino acid position number for this sequence: 
     
 
 
AminoTrack™ Created by

Madhumita Mahalanabis
Jason Blue
Viral Vaccines Program & IT Department, Seattle Biomedical Research Institute
Seattle, WA 98109
 
Please cite the following reference in publications containing data or analyses generated by AminoTrack™: Mahalanabis, M., J. Blue, and N. L. Haigwood. 2006. AminoTrack™ : Automating the Entry and Analysis of Mutations in Multiple Protein Sequences Using a Spreadsheet Format. In H. R. Arabnia (ed.), Proceedings of the 2006 International Conference on Bioinformatics and Computational Biology (BIOCOMP'06). CSREA Press, Las Vegas, NV. pp. 549-555.
 

For questions or problems, please contact helpdesk@sbri.org

AminoTrack™ is a trademark of Seattle Biomedical Research Institute, Seattle, Washington
© The AminoTrack software program is copyrighted by Seattle Biomedical Research Institute, Seattle WA 2006