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Seattle Structural Genomics Center for Infectious Disease

AcbaC.00102.a: 2-dehydro-3-deoxyphosphooctonate aldolase

Target Characteristics

from organism: Acinetobacter baumannii AB5075-UW
most recent status: in PDB
center reference id: AcbaC.00102.a
is community request: True
associated disease:
NIH risk group: 2
is select agent: False
NIH priority
pathogens category:
unclassified

Ordering Clones & Proteins

If there are materials available for this target, they will be listed below. Materials can be ordered from SSGCID using the button in the "order material" column. Clicking the button will add the material to a virtual cart. You may order multiple materials at a time at no cost to you, as this contract is funded by NIAID. When you are ready to place your order, click the "Place Order" link which will appear in the top right corner of the page after you place your first item in your cart.

Clones*

CENTER
REFERENCE ID
DOMAIN/REGION
DESCRIPTION
INFO AA
START
AA
STOP
ORDER
MATERIAL
AcbaC.00102.a.B1.GE38583 full length 1 285 GE38583
AcbaC.00102.a.B3.GE40439 truncation 2 5 285 GE40439
AcbaC.00102.a.B5.GE40440 truncation 4 7 284 GE40440
* SSGCID clones represent un-induced expression constructs which have been verified by sequencing from vector primers. Clones may contain a tag, such as N-term 6xHis. Get sequence information using the button in the "info" column.

Proteins

CENTER
REFERENCE ID
DOMAIN/REGION
DESCRIPTION
INFO AA
START
AA
STOP
ORDER
MATERIAL
AcbaC.00102.a.B3.PS38194 truncation 2 5 285
AcbaC.00102.a.B1.PW37676 full length 1 285

Structures

image of structure for 6BNG
6BNG
Deposited: 11/16/2017
Determination: XRay
Diffraction Image
Clone: AcbaC.00102.a.B3.GE40439
Protein: AcbaC.00102.a.B3.PS38194

External Resources

Resource Reference ID
GenBank: AKA31561.1
PATRIC ID: fig|470.1345.peg.1781
PGAT: acinetobacter:ABUW_1826
RefSeq: WP_000080538.1
UniProt: V5VC98

Enzyme & Pathway Information

Pathway Pathway ID EC Number
superpathway of (KDO)2-lipid A biosynthesis KDO-NAGLIPASYN-PWY 2.5.1.55
superpathway of lipopolysaccharide biosynthesis LPSSYN-PWY 2.5.1.55
CMP-3-deoxy-D-manno-octulosonate biosynthesis PWY-1269 2.5.1.55
CMP-3-deoxy-D-manno-octulosonate biosynthesis II (from D-arabinose 5-phosphate) PWY-5111 2.5.1.55
CMP-8-amino-3,8-dideoxy-D-manno-octulosonate biosynthesis PWY-7674 2.5.1.55

Sequences

These sequences are the native gene sequence; sequences of constructs derived from these sequences may differ due to codon optimization or other protocols. To find the specific sequence of any material you may have ordered, click on the "more" button next to the name of that material.
AA Sequence
MSQLKPQEVV RLGDIQMANH LPFVLFGGMN VLESKDLAFE IAETYIDICK RLDIPYVFKA SFDKANRSSL HSFRGPGLEK GIEWLGDIKK HFNVPIITDV HEPYQAAPVA EVADIIQLPA FLSRQTDLVE AMAKTQAIIN IKKAQFLAPH EMRHILHKCL EAGNDKLILC ERGSAFGYNN LVVDMLGFDI MKEMNVPVFF DVTHALQTPG GRSDSAGGRR AQITTLARAG MATGLAGLFL ESHPDPDKAK CDGPSALRLS QLEPFLAQLK ELDTLVKGFK KLDTH

NT Sequence
ATGTCACAAT TAAAACCACA AGAAGTTGTA CGTTTAGGCG ATATACAAAT GGCAAATCAT TTGCCATTTG TATTATTTGG CGGAATGAAC GTACTCGAGT CAAAAGATTT AGCTTTTGAA ATTGCTGAAA CTTATATTGA TATTTGTAAA CGCCTGGATA TTCCTTATGT ATTTAAGGCG AGTTTTGATA AAGCAAACCG TTCTAGTTTG CATTCATTCC GTGGTCCTGG ACTTGAAAAA GGTATTGAAT GGTTAGGCGA CATTAAAAAA CATTTTAATG TACCAATTAT TACCGACGTT CACGAACCAT ATCAGGCAGC GCCAGTTGCC GAAGTCGCTG ATATTATCCA GCTTCCTGCT TTCTTAAGCC GTCAAACTGA TCTTGTTGAA GCAATGGCGA AAACCCAAGC TATTATCAAC ATTAAAAAAG CACAGTTCTT GGCTCCTCAT GAAATGCGCC ATATTTTGCA TAAATGTTTA GAAGCGGGAA ATGACAAACT TATTCTTTGT GAGCGTGGCT CAGCATTTGG CTATAACAAT TTAGTTGTAG ACATGCTTGG CTTTGACATC ATGAAAGAAA TGAATGTACC TGTATTCTTT GACGTGACTC ATGCTTTACA AACTCCAGGT GGTCGTTCGG ATTCAGCTGG TGGTCGCCGT GCTCAAATTA CAACATTGGC ACGTGCTGGT ATGGCAACAG GTTTAGCGGG ATTATTCCTA GAGTCTCATC CAGATCCAGA CAAAGCAAAA TGTGATGGAC CATCTGCATT GCGCTTGTCA CAGCTTGAGC CATTCTTGGC ACAACTAAAA GAATTGGATA CTTTAGTTAA AGGATTCAAA AAGTTAGATA CTCATTGA

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