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Seattle Structural Genomics Center for Infectious Disease

AcbaC.18995.a: oligoribonuclease Orn

Target Characteristics

from organism: Acinetobacter baumannii AB5075-UW
most recent status: in PDB
center reference id: AcbaC.18995.a
is community request: True
associated disease:
NIH risk group: 2
is select agent: False
NIH priority
pathogens category:
unclassified

Ordering Clones & Proteins

If there are materials available for this target, they will be listed below. Materials can be ordered from SSGCID using the button in the "order material" column. Clicking the button will add the material to a virtual cart. You may order multiple materials at a time at no cost to you, as this contract is funded by NIAID. When you are ready to place your order, click the "Place Order" link which will appear in the top right corner of the page after you place your first item in your cart.

Clones*

CENTER
REFERENCE ID
DOMAIN/REGION
DESCRIPTION
INFO AA
START
AA
STOP
ORDER
MATERIAL
AcbaC.18995.a.B1.GE38947 full length 1 188 GE38947
* SSGCID clones represent un-induced expression constructs which have been verified by sequencing from vector primers. Clones may contain a tag, such as N-term 6xHis. Get sequence information using the button in the "info" column.

Proteins

CENTER
REFERENCE ID
DOMAIN/REGION
DESCRIPTION
INFO AA
START
AA
STOP
ORDER
MATERIAL
AcbaC.18995.a.B1.PS02406 full length 1 188

Structures

image of structure for 5CY4
5CY4
Deposited: 7/30/2015
Determination: XRay
Diffraction Image
Clone: AcbaC.18995.a.B1.GE38947
Protein: AcbaC.18995.a.B1.PS02406

Citations by Others

Structural basis of small RNA hydrolysis by oligoribonuclease (Cps ORN) from Colwellia psychrerythraea strain 34H
CW Lee, SH Park, CS Jeong, SS Cha, H Park- Scientific reports, 2019 - nature.com
cited by: 3 others
PDB: 5CY4
Structural insights into nanoRNA degradation by human Rexo2
LY Chu, S Agrawal, YP Chen, WZS Yang, HS Yuan- RNA, 2019 - rnajournal.cshlp.org
PDB: 5CY4

This list was obtained from Google Scholar searches using the Open Source tool https://github.com/ckreibich/scholar.py and each citation has been manually reviewed.

External Resources

Resource Reference ID
GenBank: AKA33063.1
PATRIC ID: fig|470.1345.peg.3302
PGAT: acinetobacter:ABUW_3367
RefSeq: WP_000099436.1
UniProt: V5VGJ9

Sequences

These sequences are the native gene sequence; sequences of constructs derived from these sequences may differ due to codon optimization or other protocols. To find the specific sequence of any material you may have ordered, click on the "more" button next to the name of that material.
AA Sequence
MSSTLNTRLI WIDLEMTGLD TDNDQIIEIA TIITDDHLNV LAEGPVLAIH QPDRILNAMD EWNTRQHGQS GLIERVRRSK LTARDAELQT LEFLKKWVNP KVSPMCGNSI CQDRRFLHRL MPELEQYFHY RNLDVSTVKE LSKRWRPEIM SGLKKNASHL AMDDIRDSIS ELKYYREYFF IMNTDGKD

NT Sequence
ATGAGCAGTA CTTTAAATAC ACGATTAATT TGGATTGATC TGGAAATGAC AGGTTTAGAT ACCGACAACG ACCAGATTAT TGAAATTGCA ACAATTATTA CAGATGATCA TTTAAATGTA CTTGCCGAAG GTCCGGTTTT GGCTATTCAT CAACCTGATC GTATTTTAAA TGCAATGGAT GAGTGGAATA CGCGTCAGCA CGGCCAGTCA GGTTTAATTG AACGAGTTCG TCGTAGTAAA TTGACCGCTC GTGATGCTGA GTTACAGACT TTAGAATTTC TAAAAAAATG GGTAAATCCA AAAGTTTCAC CAATGTGTGG TAACTCGATT TGTCAGGATC GCCGTTTCTT ACATCGTCTT ATGCCTGAAC TAGAACAGTA TTTCCACTAC CGTAATCTTG ACGTATCTAC AGTAAAAGAA CTCTCAAAAC GCTGGCGTCC TGAAATTATG AGTGGTCTGA AAAAAAATGC ATCACATTTG GCGATGGATG ACATTCGTGA TTCTATTTCT GAGCTTAAGT ATTACCGCGA ATACTTCTTC ATTATGAATA CTGACGGTAA AGATTGA

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