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BupsA.00001.a: Cytidine deaminase

Target Characteristics

from organism: Burkholderia pseudomallei 1710b
most recent status: in PDB
center reference id: BupsA.00001.a
is community request: False
associated disease: Melioidosis
NIH risk group: 3
is select agent: True
NIH priority
pathogens category:
IIIB

Ordering Clones & Proteins

If there are materials available for this target, they will be listed below. Materials can be ordered from SSGCID using the button in the "order material" column. Clicking the button will add the material to a virtual cart. You may order multiple materials at a time at no cost to you, as this contract is funded by NIAID. When you are ready to place your order, click the "Place Order" link which will appear in the top right corner of the page after you place your first item in your cart.

Clones*

CENTER
REFERENCE ID
DOMAIN/REGION
DESCRIPTION
INFO AA
START
AA
STOP
ORDER
MATERIAL
BupsA.00001.a.A1.GE24979 Full length( BupsA.00001.a ) 1 130 GE24979
BupsA.00001.a.B1.GE25075 Full length( BupsA.00001.a ) 1 130 GE25075
BupsA.00001.a.B1.GE25075 Full length( BupsA.00001.a ) 1 130 GE25075
* SSGCID clones represent un-induced expression constructs which have been verified by sequencing from vector primers. Clones may contain a tag, such as N-term 6xHis. Get sequence information using the button in the "info" column.

Structures

image of structure for 3DMO
3DMO
Deposited: 7/1/2008
Determination: XRay
Diffraction Image
Clone:
Protein: BupsA.00001.a.B1.PS0010

Citations by Others

Crystal structures of MBP fusion proteins
DS Waugh - Protein Science, 2015 - Wiley Online Library
cited by: 11 others
PDB: 3DMO
Rare Sidechain Conformations in Proteins and DNA
BJ Hintze - 2015 - search.proquest.com
PDB: 3DMO
Crystal structure determination and dynamic studies of< i> Mycobacterium tuberculosis Cytidine deaminase in complex with products
ZA S?nchez-Quitian, LFSM Timmers? - Archives of Biochemistry and Biophysics, 2011 - Elsevier
cited by: 5 others
PDB: 3DMO
Achievements of structural genomics
TC Terwilliger - 2011 - permalink.lanl.gov
PDB: 3DMO
Structural and functional analyses of< i> Mycobacterium tuberculosis Rv3315c-encoded metal-dependent homotetrameric cytidine deaminase
ZA S?nchez-Quitian, CZ Schneider, RG Ducati? - Journal of structural Biology, 2010 - Elsevier
cited by: 15 others
PDB: 3DMO

This list was obtained from Google Scholar searches using the Open Source tool https://github.com/ckreibich/scholar.py and each citation has been manually reviewed.

External Resources

Resource Reference ID
OrthoMCL: OG5_127381
PATRIC ID: fig|320372.6.peg.5129
RefSeq: YP_336223
UniProt: Q3JJN0

Enzyme & Pathway Information

Pathway Pathway ID EC Number
purine and pyrimidine metabolism P1-PWY 3.5.4.5
pyrimidine ribonucleosides degradation PWY0-1295 3.5.4.5
superpathway of pyrimidine deoxyribonucleosides degradation PWY0-1298 3.5.4.5
salvage pathways of pyrimidine ribonucleotides PWY0-163 3.5.4.5
pyrimidine ribonucleosides salvage II PWY-6556 3.5.4.5
pyrimidine deoxyribonucleosides degradation PWY-7181 3.5.4.5
pyrimidine ribonucleosides salvage I PWY-7193 3.5.4.5
superpathway of pyrimidine ribonucleosides salvage PWY-7196 3.5.4.5
pyrimidine deoxyribonucleosides salvage PWY-7199 3.5.4.5
superpathway of pyrimidine deoxyribonucleoside salvage PWY-7200 3.5.4.5
superpathway of pyrimidine ribonucleosides degradation PWY-7209 3.5.4.5

Sequences

These sequences are the native gene sequence; sequences of constructs derived from these sequences may differ due to codon optimization or other protocols. To find the specific sequence of any material you may have ordered, click on the "more" button next to the name of that material.
AA Sequence
MTHHALIEAA KAAREKAYAP YSNFKVGAAL VTNDGKVFHG CNVENASYGL CNCAERTALF SALAAGYRPG EFAAIAVVGE THGPIAPCGA CRQVMIELGK PTLEVVLTNM QGDVRVTSAG DLLPDAFYLA

NT Sequence
ATGACGCATC ACGCATTGAT CGAAGCGGCG AAGGCCGCGC GCGAAAAGGC CTACGCGCCG TATTCGAACT TCAAGGTCGG CGCGGCGCTC GTGACGAACG ACGGCAAGGT CTTCCACGGC TGCAACGTCG AGAACGCGTC GTACGGGCTG TGCAATTGCG CGGAGCGCAC CGCCTTGTTT TCTGCGCTCG CGGCGGGCTA CCGGCCGGGC GAGTTCGCGG CGATCGCGGT CGTCGGCGAG ACGCACGGGC CGATCGCGCC GTGCGGCGCG TGCCGGCAGG TCATGATCGA GCTCGGCAAG CCGACGCTCG AAGTCGTGTT GACGAACATG CAGGGCGACG TGCGCGTGAC GAGCGCGGGT GACCTGCTGC CGGACGCGTT CTATCTGGCG

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